STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuBAliphatic sulfonates import ATP-binding protein SsuB. (256 aa)    
Predicted Functional Partners:
cmpB
Bicarbonate transport system permease protein CmpB.
 
 
 0.992
CUP61465.1
Alkanesulfonate transporter substrate-binding subunit.
 
 
 0.987
ssuC
Putative aliphatic sulfonates transport permease protein ssuC.
 
 0.936
modB
Molybdenum transport system permease protein modB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 0.916
gsiA_2
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
     
0.888
ybhF_4
Uncharacterized ABC transporter ATP-binding protein YbhF.
 
  
 
0.869
ecsA
ABC-type transporter ATP-binding protein EcsA.
 
  
 
0.864
potD
Spermidine/putrescine-binding periplasmic protein precursor.
  
  0.820
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
      0.801
CUP87243.1
ABC-type taurine transport system%2C periplasmic component.
  
 
 0.726
Your Current Organism:
Coprococcus comes
NCBI taxonomy Id: 410072
Other names: ATCC 27758, C. comes, VPI C1-38
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