STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP63469.1DNA-directed RNA polymerase subunit P. (364 aa)    
Predicted Functional Partners:
CUP63493.1
Domain of uncharacterised function (DUF477).
 
  
 0.987
CUP63335.1
Putative virion core protein (lumpy skin disease virus).
 
  
 0.938
CUP63443.1
Uncharacterised protein.
       0.732
CUP63232.1
Sensory histidine kinase UhpB.
 
     0.690
CUP42858.1
Sensory histidine kinase UhpB.
  
     0.603
CUP63417.1
Double zinc ribbon.
       0.575
vraR_2
Response regulator protein vraR.
 
     0.515
scfA
Six-cysteine peptide SCIFF.
       0.503
vraR_1
Response regulator protein vraR.
  
     0.498
CUP63398.1
Uncharacterised protein.
       0.489
Your Current Organism:
Coprococcus comes
NCBI taxonomy Id: 410072
Other names: ATCC 27758, C. comes, VPI C1-38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.