STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB68375.1Hypothetical protein. (99 aa)    
Predicted Functional Partners:
SEB68430.1
Hypothetical protein.
       0.773
SEB68308.1
Homeodomain-like domain-containing protein.
       0.539
SEB68482.1
Antirestriction protein.
       0.483
SEB68537.1
Hypothetical protein.
       0.483
SEB68577.1
Hypothetical protein.
       0.483
SEB68632.1
Hypothetical protein.
       0.483
SEB68254.1
Hypothetical protein.
       0.421
SEB68685.1
Hypothetical protein.
       0.420
Your Current Organism:
Gordonia malaquae
NCBI taxonomy Id: 410332
Other names: CCUG 53555, DSM 45064, G. malaquae, Gordonia malaquae Yassin et al. 2007, IMMIB WWCC-22, JCM 14874, NBRC 108250
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.