STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0074PFAM: protein of unknown function DUF112, transmembrane. (408 aa)    
Predicted Functional Partners:
Mlab_0072
PFAM: PUA domain containing protein; pseudouridylate synthase TruB domain protein.
 
     0.647
Mlab_0289
PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1.
 
     0.583
Mlab_0073
Uroporphyrinogen-III synthase-like protein.
       0.576
atpF
Vacuolar H+-transporting two-sector ATPase, F subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.561
secD
Preprotein translocase subunit SecD-like protein; Involved in protein export.
  
     0.556
rpl44e
LSU ribosomal protein L44E; Binds to the 23S rRNA.
  
     0.544
Mlab_1347
PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1.
 
     0.544
Mlab_1368
TIGRFAM: tRNA intron endonuclease; PFAM: tRNA intron endonuclease, catalytic-like.
 
     0.525
Mlab_1283
Uncharacterized Zn-finger protein-like protein.
  
     0.523
Mlab_1309
PFAM: Protein of unknown function DUF63.
  
     0.499
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.