STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0179Signal transduction histidine kinase, LytS; PFAM: 5TM Receptors of the LytS-YhcK type, transmembrane region. (257 aa)    
Predicted Functional Partners:
Mlab_1451
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
  
 
 0.814
Mlab_1452
Putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
 
 0.778
cofG
Radical SAM domain protein; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) from 5-amino-5-(4-hydroxybenzyl)-6-(D- ribitylimino)-5,6-dihydrouracil.
  
  
 0.613
Mlab_0123
PFAM: Radical SAM domain protein.
  
  
 0.600
Mlab_0178
Hypothetical protein.
       0.553
Mlab_0663
PFAM: glycosyl transferase, family 2.
 
  
 0.457
Mlab_0964
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
     0.435
Mlab_0963
SMART: von Willebrand factor, type A.
  
     0.424
Mlab_1429
PFAM: acyltransferase 3.
 
   
 0.411
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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