STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0197Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR. (197 aa)    
Predicted Functional Partners:
Mlab_1710
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
  
     0.606
Mlab_0196
TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent.
 
     0.576
Mlab_1259
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
 
   
 0.551
Mlab_0193
PFAM: protein of unknown function DUF214.
 
   
 0.550
Mlab_1708
Hypothetical protein.
 
  
 0.550
Mlab_0300
TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein.
     
 0.528
Mlab_0194
PFAM: ABC transporter related; SMART: AAA ATPase.
   
 
 0.472
Mlab_0295
PFAM: regulatory protein, MarR; transcriptional regulator PadR family protein.
 
   
 0.407
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.