STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0502PFAM: protein of unknown function DUF39. (408 aa)    
Predicted Functional Partners:
Mlab_0500
PFAM: cobalamin synthesis protein, P47K; SMART: AAA ATPase.
 
     0.842
Mlab_0503
L-threonine synthase; Specifically catalyzes the beta-elimination of phosphate from L-phosphoserine and the beta-addition of sulfite to the dehydroalanine intermediate to produce L-cysteate.
 
   
 0.837
Mlab_0499
PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.835
Mlab_0504
Sulfopyruvate decarboxylase subunit beta / sulfopyruvate decarboxylase subunit alpha.
       0.817
Mlab_0501
Fe-S protein-like protein.
       0.811
Mlab_0452
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
  
 0.798
Mlab_0453
PFAM: protein of unknown function DUF375; Belongs to the UPF0280 family.
 
   
 0.770
rfcL
Replication factor C large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily.
       0.418
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.