STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0547Rossmann fold nucleotide-binding protein-like protein. (199 aa)    
Predicted Functional Partners:
Mlab_0548
TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase.
 
     0.605
Mlab_0555
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.535
Mlab_0551
TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type.
       0.532
Mlab_0549
Uncharacterized protein related to methyl coenzyme M reductase subunit C-like protein.
       0.522
Mlab_0550
Uncharacterized protein-like protein.
       0.522
Mlab_0552
Uncharacterized protein-like protein.
       0.522
Mlab_0553
Uncharacterized protein-like protein.
       0.522
Mlab_0554
Peptidyl-prolyl cis-trans isomerase (rotamase) cyclophilin family-like protein; Belongs to the UPF0288 family.
       0.522
Mlab_0204
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.433
Mlab_0580
MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like.
     
 0.401
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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