STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0622TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter. (483 aa)    
Predicted Functional Partners:
Mlab_1070
PFAM: sodium:dicarboxylate symporter.
 
  
 0.610
Mlab_0621
PFAM: beta-lactamase domain protein.
       0.564
lig
DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
       0.563
Mlab_1071
PFAM: Cl- channel, voltage-gated family protein.
  
    0.547
gatD
glutamyl-tRNA(Gln) amidotransferase, subunit D; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.
  
  
 0.511
Mlab_0623
Hypothetical protein.
       0.498
Mlab_1436
PFAM: ABC transporter related; SMART: AAA ATPase; TC 3.A.1.3.-.
  
  
 0.462
Mlab_0611
PFAM: Na+/H+ antiporter NhaC; TC 2.A.35.
  
  
 0.446
Mlab_0624
PFAM: GTP-binding protein, HSR1-related; TGS domain protein; GTPase of unknown function-like.
  
    0.445
Mlab_0182
PFAM: Xanthine/uracil/vitamin C permease.
 
  
 0.441
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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