STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0734PFAM: TrkA-C domain protein; PhoU family protein. (402 aa)    
Predicted Functional Partners:
Mlab_0735
PFAM: phosphoesterase, RecJ domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: RNA binding S1 domain protein.
       0.779
Mlab_1022
PFAM: MgtE integral membrane region.
 
     0.777
Mlab_0762
PFAM: transcriptional regulator TrmB.
  
     0.602
Mlab_0106
PFAM: protein of unknown function DUF106, transmembrane.
 
     0.585
Mlab_1752
Conserved hypothetical protein.
 
     0.555
Mlab_0736
Hypothetical protein.
       0.532
Mlab_0988
PFAM: transcriptional regulator TrmB.
  
     0.518
Mlab_0497
PFAM: transcriptional regulator TrmB.
  
     0.507
rps24e
PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
     0.499
Mlab_0733
Hypothetical protein.
       0.489
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.