STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0832PFAM: TatD-related deoxyribonuclease. (273 aa)    
Predicted Functional Partners:
mptD
Protein of unknown function DUF372; Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD); Belongs to the archaeal dihydroneopterin aldolase family.
       0.849
Mlab_0830
Replicative DNA helicase Mcm; PFAM: magnesium chelatase, ChlI subunit; MCM family protein; Belongs to the MCM family.
       0.796
rpl40e
PFAM: Ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
 
     0.700
Mlab_0924
Nmd3; PFAM: NMD3.
 
     0.692
Mlab_1628
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein.
  
     0.654
Mlab_1208
PFAM: PUA domain containing protein.
  
     0.644
Mlab_0741
PFAM: Protein of unknown function DUF373.
  
     0.604
Mlab_1266
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.595
rpl39e
PFAM: ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
     0.589
Mlab_1173
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
  
     0.583
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.