STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0920Pantothenate synthetase. (245 aa)    
Predicted Functional Partners:
Mlab_0921
PFAM: GHMP kinase.
 
  
 0.997
Mlab_0922
TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein.
 
  
 0.991
mfnA
Pyridoxal-dependent decarboxylase; Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis; Belongs to the group II decarboxylase family. MfnA subfamily.
 
  
 0.926
Mlab_0388
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
Mlab_0924
Nmd3; PFAM: NMD3.
 
     0.895
Mlab_0919
DNA polymerase III gamma/tau subunits-like protein.
       0.849
Mlab_0923
PFAM: protein of unknown function Met10; methyltransferase small.
       0.848
Mlab_0925
PFAM: Protein of unknown function DUF424.
       0.823
Mlab_0917
Hypothetical protein.
       0.767
Mlab_0918
PFAM: ThiJ/PfpI domain protein.
       0.767
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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