Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mlab_0963SMART: von Willebrand factor, type A. (492 aa)    
Predicted Functional Partners:
Mlab_0964
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
     0.979
Mlab_0179
Signal transduction histidine kinase, LytS; PFAM: 5TM Receptors of the LytS-YhcK type, transmembrane region.
  
     0.424
Mlab_1136
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein.
  
     0.411
Mlab_1648
PFAM: Chorismate mutase; Prephenate dehydrogenase.
  
     0.406
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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