Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mlab_1024Tungstate/molybdate transport system ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase. (335 aa)    
Predicted Functional Partners:
Mlab_1023
PFAM: binding-protein-dependent transport systems inner membrane component.
 0.997
Mlab_1025
Tungstate/molybdate binding protein.
 
  
  0.930
Mlab_1435
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; TC 3.A.1.3.-.
 
    0.919
Mlab_0044
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
 
    
0.910
Mlab_1258
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
     
0.900
Mlab_0717
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
 
    
0.884
Mlab_0193
PFAM: protein of unknown function DUF214.
      0.815
Mlab_1022
PFAM: MgtE integral membrane region.
 
     0.575
Mlab_1548
PFAM: ABC transporter related; SMART: AAA ATPase.
    
0.574
rpl2
LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
 
     0.523
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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