STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_1062PFAM: Substrate-binding region of ABC-type glycine betaine transport system. (298 aa)    
Predicted Functional Partners:
Mlab_1060
TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase.
 0.999
Mlab_1061
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.999
Mlab_1486
TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein.
  
  
 0.491
Mlab_1435
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; TC 3.A.1.3.-.
    
 0.442
Mlab_1437
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; TC 3.A.1.3.-.
    
 0.442
Mlab_0041
PFAM: extracellular solute-binding protein, family 5.
    
 0.401
Mlab_0169
PFAM: extracellular solute-binding protein, family 5.
    
 0.401
Mlab_0722
4-phytase; PFAM: extracellular solute-binding protein, family 5.
    
 0.401
Mlab_0723
4-phytase; PFAM: extracellular solute-binding protein, family 5.
    
 0.401
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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