Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Mlab_0425 | Mlab_1037 | Mlab_0425 | Mlab_1037 | Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. | PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein. | 0.680 |
Mlab_0425 | Mlab_1143 | Mlab_0425 | Mlab_1143 | Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. | Hypothetical protein. | 0.501 |
Mlab_0425 | lysA | Mlab_0425 | Mlab_0634 | Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.626 |
Mlab_0425 | pdaD | Mlab_0425 | Mlab_0203 | Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. | TIGRFAM: arginine decarboxylase, pyruvoyl-dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family. | 0.951 |
Mlab_0688 | Mlab_1143 | Mlab_0688 | Mlab_1143 | PFAM: aspartate/glutamate/uridylate kinase. | Hypothetical protein. | 0.478 |
Mlab_0894 | Mlab_1143 | Mlab_0894 | Mlab_1143 | PFAM: polysaccharide biosynthesis protein. | Hypothetical protein. | 0.503 |
Mlab_0978 | Mlab_1143 | Mlab_0978 | Mlab_1143 | Translation initiation factor 2B subunit I family (IF-2BI); Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily. | Hypothetical protein. | 0.465 |
Mlab_1037 | Mlab_0425 | Mlab_1037 | Mlab_0425 | PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein. | Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. | 0.680 |
Mlab_1037 | Mlab_1143 | Mlab_1037 | Mlab_1143 | PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein. | Hypothetical protein. | 0.471 |
Mlab_1037 | lysA | Mlab_1037 | Mlab_0634 | PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.476 |
Mlab_1138 | Mlab_1143 | Mlab_1138 | Mlab_1143 | Geranylgeranylglyceryl phosphate synthase family protein; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. | Hypothetical protein. | 0.486 |
Mlab_1138 | topA | Mlab_1138 | Mlab_1139 | Geranylgeranylglyceryl phosphate synthase family protein; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. | DNA topoisomerase, type IA, central domain protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken [...] | 0.860 |
Mlab_1143 | Mlab_0425 | Mlab_1143 | Mlab_0425 | Hypothetical protein. | Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. | 0.501 |
Mlab_1143 | Mlab_0688 | Mlab_1143 | Mlab_0688 | Hypothetical protein. | PFAM: aspartate/glutamate/uridylate kinase. | 0.478 |
Mlab_1143 | Mlab_0894 | Mlab_1143 | Mlab_0894 | Hypothetical protein. | PFAM: polysaccharide biosynthesis protein. | 0.503 |
Mlab_1143 | Mlab_0978 | Mlab_1143 | Mlab_0978 | Hypothetical protein. | Translation initiation factor 2B subunit I family (IF-2BI); Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily. | 0.465 |
Mlab_1143 | Mlab_1037 | Mlab_1143 | Mlab_1037 | Hypothetical protein. | PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein. | 0.471 |
Mlab_1143 | Mlab_1138 | Mlab_1143 | Mlab_1138 | Hypothetical protein. | Geranylgeranylglyceryl phosphate synthase family protein; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. | 0.486 |
Mlab_1143 | gap | Mlab_1143 | Mlab_1723 | Hypothetical protein. | TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: glyceraldehyde 3-phosphate dehydrogenase; dihydrodipicolinate reductase. | 0.455 |
Mlab_1143 | lysA | Mlab_1143 | Mlab_0634 | Hypothetical protein. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.500 |
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