STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_1259Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR. (147 aa)    
Predicted Functional Partners:
Mlab_1258
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
  
 0.863
Mlab_1257
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
  
 0.861
Mlab_1710
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
 
   
 0.591
Mlab_1260
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp.
     
 0.562
Mlab_0197
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
 
   
 0.551
Mlab_1048
PFAM: protein of unknown function DUF161.
 
     0.418
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.