STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_1309PFAM: Protein of unknown function DUF63. (278 aa)    
Predicted Functional Partners:
Mlab_1307
PFAM: Protein of unknown function UPF0179; Belongs to the UPF0179 family.
 
   
 0.769
egsA
3-dehydroquinate synthase; Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea. Belongs to the glycerol-1-phosphate dehydrogenase family.
     
 0.712
Mlab_1569
DNA-directed RNA polymerase, subunit F; PFAM: RNA polymerase Rpb4.
 
     0.620
Mlab_1402
PFAM: protein of unknown function DUF75.
  
     0.592
Mlab_0635
PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type.
  
     0.591
Mlab_0754
PFAM: phosphoesterase, RecJ domain protein; TrkA-N domain protein; phosphoesterase, DHHA1.
  
     0.544
Mlab_0435
PFAM: Protein of unknown function DUF460.
  
     0.541
Mlab_1458
PFAM: type II secretion system protein.
  
     0.539
Mlab_0106
PFAM: protein of unknown function DUF106, transmembrane.
  
     0.538
rpl15
LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
     0.536
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.