STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_1364PFAM: Xylose isomerase domain protein TIM barrel. (256 aa)    
Predicted Functional Partners:
Mlab_1363
Dephospho-CoA kinase-like protein.
       0.818
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.798
Mlab_1362
PFAM: Sjogrens syndrome scleroderma autoantigen 1.
       0.779
Mlab_1361
PFAM: Protein of unknown function UPF0147; Belongs to the UPF0147 family.
 
     0.634
Mlab_0932
Inosine-guanosine kinase / cytidine kinase; PFAM: PfkB domain protein.
  
  
 0.599
Mlab_1366
Transcriptional regulator, ArsR family; PFAM: regulatory protein, MarR; regulatory protein, ArsR; 4-vinyl reductase, 4VR; Helix-turn-helix, type 11 domain protein.
       0.545
Mlab_0230
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.429
Mlab_0520
Nitrogenase molybdenum-iron protein alpha and beta chains-like protein.
 
     0.412
Mlab_0496
PFAM: AIR synthase related protein; AIR synthase related protein domain protein.
 
     0.410
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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