STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_1378PFAM: ABC transporter related; SMART: AAA ATPase. (409 aa)    
Predicted Functional Partners:
Mlab_1377
PFAM: transport system permease protein.
 
 0.985
Mlab_1290
PFAM: transport system permease protein.
 
 0.919
Mlab_1153
PFAM: transport system permease protein.
 
 0.880
Mlab_1089
PFAM: transport system permease protein; ABC-3 protein.
 
 0.848
Mlab_1374
PFAM: periplasmic binding protein.
 
 
 0.843
Mlab_1043
PFAM: transport system permease protein; inner-membrane translocator.
 
 0.836
Mlab_1720
PFAM: transport system permease protein.
 
 0.833
Mlab_1288
PFAM: periplasmic binding protein.
 
 
 0.811
Mlab_1379
PFAM: Xylose isomerase domain protein TIM barrel.
       0.786
Mlab_1372
PFAM: periplasmic binding protein.
 
 
 0.749
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.