STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_1496Uncharacterized membrane protein-like protein. (672 aa)    
Predicted Functional Partners:
Mlab_1492
PFAM: amine oxidase.
 
    0.917
Mlab_1494
PFAM: conserved hypothetical protein 374.
 
  
 0.826
Mlab_0531
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
    0.769
Mlab_1439
PFAM: glycosyl transferase, family 39.
 
     0.756
Mlab_1315
PFAM: ribonuclease III.
  
    0.710
Mlab_1493
PFAM: glycosyl transferase, family 2.
 
  
 0.704
Mlab_0966
UDP-galactopyranose mutase; PFAM: amine oxidase.
 
    0.648
Mlab_0902
Protoporphyrinogen oxidase-like protein.
 
    0.631
Mlab_1495
TIGRFAM: methyltransferase FkbM family.
 
    0.623
Mlab_0662
PFAM: Oligosaccharyl transferase, STT3 subunit.
 
     0.563
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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