STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_1510TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter. (522 aa)    
Predicted Functional Partners:
prf1
Peptide chain release factor subunit 1 (aeRF-1); Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
       0.553
argS
TIGRFAM: arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.552
Mlab_0140
Thiol-driven fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.527
Mlab_1489
PFAM: TrkA-N domain protein; TrkA-C domain protein.
  
  
 0.516
Mlab_0172
PFAM: cation transporter.
  
  
 0.514
Mlab_1050
PFAM: amino acid permease-associated region; TC 2.A.3.
  
  
 0.508
htpX
HtpX-2 peptidase. Metallo peptidase, MEROPS family M48B; PFAM: peptidase M48, Ste24p; Belongs to the peptidase M48B family.
  
  
 0.497
Mlab_0998
PFAM: phosphate transporter.
  
 
 0.494
Mlab_0714
Citrate transporter; PFAM: Arsenical pump membrane protein; Citrate transporter.
     
 0.475
Mlab_0410
PFAM: PUA domain containing protein; phosphoadenosine phosphosulfate reductase.
  
  
 0.449
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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