STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_0102KEGG: pai:PAE0934 hypothetical protein. (270 aa)    
Predicted Functional Partners:
Pcal_1518
PFAM: transport system permease protein; KEGG: pai:PAE0366 iron (III) dicitrate transport system, permease protein, putative.
  
 
 0.995
Pcal_0101
Hypothetical protein.
       0.773
Pcal_0215
KEGG: pai:PAE0329 putative thiamine transport system permease protein.
   
  
 0.595
Pcal_0244
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE0062 molybdenum transport system permease protein, putative.
   
  
 0.595
cobD
Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
 
   
 0.562
Pcal_0248
PFAM: extracellular solute-binding protein, family 1; KEGG: pai:PAE0061 extracellular solute binding protein, conjectural.
  
  
 0.523
Pcal_0650
KEGG: pai:PAE3657 hypothetical protein.
  
  
 0.523
Pcal_1534
PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: pai:PAE0372 hypothetical protein; Belongs to the UPF0284 family.
 
   
 0.516
Pcal_1441
TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pai:PAE2587 cobyrinic acid a,c-diamide synthase (cbiA) part 2, authentic frameshift.
  
  
 0.509
Pcal_1529
PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pai:PAE0339 cobalamin biosynthesis protein G.
  
  
 0.489
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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