STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_0120PFAM: extracellular solute-binding protein, family 1; KEGG: pai:PAE0953 putrescine/spermidine binding protein, conjectural. (364 aa)    
Predicted Functional Partners:
Pcal_0364
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE2893 spermidine/putrescine transport permease protein.
 
 0.999
Pcal_0365
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE2891 spermidine/putrescine transport permease protein.
 
 
 0.998
Pcal_0366
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pai:PAE2890 spermidine/putrescine transport ATP-binding protein.
  
 0.864
Pcal_0121
paREP10; KEGG: pai:PAE0648 paREP10.
       0.686
Pcal_0122
TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: pai:PAE0969 molybdenum cofactor biosynthesis protein (moaB).
       0.654
Pcal_0123
KEGG: pai:PAE0967 hypothetical protein.
       0.638
Pcal_0118
Putative transcriptional regulator, GntR family; KEGG: pai:PAE0951 aminotransferase, conjectural.
       0.528
Pcal_0119
PFAM: protein of unknown function DUF99; KEGG: pai:PAE0952 conserved hypothetical protein; Belongs to the UPF0215 family.
       0.489
Pcal_0791
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sto:ST2084 hypothetical transcriptional regulator.
     
 0.459
Pcal_1115
KEGG: pai:PAE2993 DNA topoisomerase; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein.
     
 0.458
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.