STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_0236Methyltransferase; PFAM: putative RNA methylase; methyltransferase small; Methyltransferase type 11; KEGG: pai:PAE0261 methylase, conjectural. (202 aa)    
Predicted Functional Partners:
Pcal_0237
PFAM: NUDIX hydrolase; KEGG: pai:PAE0252 diadenosine 5'5'''-P1,P4-tetraphosphate pyrophosphohydrolase (MutT/NUDIX family protein).
       0.773
Pcal_0145
PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: pai:PAE1004 hypothetical protein.
   
    0.722
pus10
Conserved hypothetical protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
 
   
 0.617
Pcal_0238
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pai:PAE2785 ABC transporter ATP-binding protein, putative.
  
    0.591
Pcal_1377
PFAM: initiation factor 2B related; KEGG: pai:PAE1244 translation initiation factor aIF-2B subunit, conjectural; Belongs to the eIF-2B alpha/beta/delta subunits family.
  
     0.494
Pcal_0597
PFAM: PUA domain containing protein; KEGG: pai:PAE1626 PUA domain protein.
  
   
 0.492
rps24e
PFAM: Ribosomal protein S24e; KEGG: pai:PAE2434 ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
 
     0.484
Pcal_1160
RNA modification enzyme, MiaB family; KEGG: pai:PAE2939 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB.
  
    0.475
Pcal_0086
PFAM: Methyltransferase type 11; KEGG: pai:PAE0926 hypothetical protein.
  
  
 0.474
Pcal_0047
KEGG: pai:PAE0841 hypothetical protein.
 
     0.437
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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