STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_0300PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: pai:PAE2445 ornithine cyclodeaminase (ArcB). (288 aa)    
Predicted Functional Partners:
Pcal_1612
Serine--glyoxylate transaminase; PFAM: aminotransferase, class V; KEGG: pai:PAE3447 aminotransferase, class-V.
    
 0.913
Pcal_0299
DNA repair helicase RAD25; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pai:PAE2446 helicase, possible DNA repair.
       0.787
Pcal_0298
PFAM: protein of unknown function DUF790; KEGG: pai:PAE2447 hypothetical protein.
       0.773
Pcal_0301
KEGG: pai:PAE2442 hypothetical protein.
       0.720
Pcal_0675
Cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pai:PAE1051 cysteine synthase.
  
  
 0.650
Pcal_0302
PFAM: Abortive infection protein; KEGG: pai:PAE2439 conserved within P.aerophilum.
       0.529
Pcal_0350
PFAM: dihydrodipicolinate synthetase; KEGG: pai:PAE2915 dihydrodipicolinate synthase.
 
   
 0.523
Pcal_1626
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pai:PAE2260 agmatinase; Belongs to the arginase family.
  
  
 0.505
Pcal_1660
L-threonine ammonia-lyase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; amino acid-binding ACT domain protein; KEGG: pai:PAE2316 threonine dehydratase.
  
  
 0.505
Pcal_1655
PFAM: FAD dependent oxidoreductase; KEGG: pai:PAE2310 proline dehydrogenase.
 
  
 0.476
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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