STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_0612FeS assembly ATPase SufC; KEGG: pai:PAE1808 ABC transporter, putative; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase. (258 aa)    
Predicted Functional Partners:
Pcal_0613
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: pai:PAE1813 ABC transporter subunit, putative.
 
 0.999
Pcal_0085
KEGG: pai:PAE0932 hypothetical protein.
  
 
 0.986
Pcal_0246
PFAM: aminotransferase, class V; KEGG: pho:PH0626 hypothetical protein.
  
  
 0.986
Pcal_0398
PFAM: protein of unknown function DUF59; KEGG: pai:PAE2055 hypothetical protein.
 
  
 0.712
Pcal_0614
KEGG: pai:PAE1815 hypothetical protein.
       0.498
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
  
 0.474
Pcal_1653
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: pai:PAE2309 ferric uptake regulator, putative.
     
 0.459
Pcal_0626
Thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: pai:PAE1725 thioredoxin reductase.
  
  
 0.428
Pcal_1325
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; nucleoside recognition domain protein; KEGG: pai:PAE0323 iron (II) transporter (FeoB-2) part 1, conjectural, authentic frameshift.
     
 0.407
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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