STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_0684KEGG: pai:PAE1085 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Pcal_0685
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pai:PAE1082 hypothetical protein.
 
     0.613
Pcal_0686
PFAM: Rhomboid family protein; KEGG: pai:PAE1099 integral membrane protein (rhomboid related), putative.
       0.472
Pcal_0707
PFAM: protein of unknown function DUF401; KEGG: pai:PAE2454 hypothetical protein.
 
     0.437
Pcal_1254
PFAM: Rubrerythrin; Linocin_M18 bacteriocin protein; KEGG: tko:TK1060 hypothetical protein.
  
     0.417
Pcal_0600
PFAM: glycosyl transferase, family 39; KEGG: pai:PAE1623 hypothetical protein.
  
     0.414
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.