STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1024Bis(5'nucleosyl)-tetraphosphatase, ApaH; PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; KEGG: pai:PAE2004 serine/threonine specific protein phosphatase. (278 aa)    
Predicted Functional Partners:
Pcal_1730
PFAM: protein of unknown function, ATP binding; KEGG: pai:PAE3333 hypothetical protein.
  
 0.958
Pcal_1163
KEGG: pai:PAE2936 hypothetical protein.
   
 0.911
Pcal_0025
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pai:PAE0815 serine/threonine protein kinase, putative.
 
 
 0.908
Pcal_0716
PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: tma:TM0990 hypothetical protein.
 
 
 0.887
Pcal_1043
KEGG: pai:PAE3418 putative mRNA 3-end processing factor.
   
 0.882
Pcal_1749
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pai:PAE3309 putative mRNA 3-end processing factor.
   
 0.882
Pcal_0616
PFAM: AAA ATPase, central domain protein; TIP49-like; SMART: AAA ATPase; KEGG: pai:PAE1693 TBP-interacting protein TIP49.
  
 
 0.876
rpl3
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
  0.839
rpl14e
KEGG: pai:PAE0862 ribosomal protein L14; Belongs to the eukaryotic ribosomal protein eL14 family.
    
 0.828
Pcal_0026
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: pai:PAE0816 conserved protein with forkhead-associated (FHA) domain.
 
 
 0.821
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.