STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1068PFAM: Radical SAM domain protein; KEGG: pai:PAE2153 hypothetical protein. (354 aa)    
Predicted Functional Partners:
Pcal_1067
PFAM: protein of unknown function DUF437; KEGG: pai:PAE2152 hypothetical protein.
       0.778
Pcal_0286
PFAM: Radical SAM domain protein; KEGG: pai:PAE2508 hypothetical protein.
  
     0.645
Pcal_0650
KEGG: pai:PAE3657 hypothetical protein.
 
     0.542
Pcal_0248
PFAM: extracellular solute-binding protein, family 1; KEGG: pai:PAE0061 extracellular solute binding protein, conjectural.
 
     0.501
Pcal_0250
PFAM: metallophosphoesterase; KEGG: pai:PAE0055 hypothetical protein.
 
     0.460
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.