STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1343PFAM: type II secretion system protein; KEGG: sme:SMc02821 hypothetical protein. (256 aa)    
Predicted Functional Partners:
Pcal_1345
PFAM: type II secretion system protein; KEGG: pai:PAE2779 hypothetical protein.
  
  
 0.979
Pcal_1344
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: pai:PAE2778 type II secretion system protein, conjectural.
 
  
 0.949
Pcal_1342
Hypothetical protein.
     
 0.709
Pcal_0330
KEGG: pai:PAE2399 type II secretion system protein, conjectural.
 
  
 0.688
Pcal_2151
PFAM: type II secretion system protein E; KEGG: pai:PAE0773 conserved protein (possible type II secretion, gsp).
 
  
 0.680
Pcal_1347
SMART: AAA ATPase; KEGG: pai:PAE0320 P.aerophilum family 417, putative ATP binding.
       0.592
Pcal_1346
Conserved hypothetical protein; KEGG: pai:PAE2800 P.aerophilum family 453.
       0.584
Pcal_1341
Hypothetical protein.
       0.521
Pcal_1114
Diphthamide biosynthesis protein; Catalyzes the first step of diphthamide biosynthesis, i.e. the transfer of the 3-amino-3-carboxypropyl group from S-adenosyl-L- methionine (SAM) to the C2 position of the imidazole ring of the target histidine residue in translation elongation factor 2 (EF-2). Belongs to the DPH1/DPH2 family.
  
     0.441
Pcal_0738
PFAM: Radical SAM domain protein; KEGG: pai:PAE1163 hypothetical protein.
  
    0.438
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.