STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1371PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pai:PAE1266 hypothetical protein. (206 aa)    
Predicted Functional Partners:
Pcal_1372
PFAM: Radical SAM domain protein; KEGG: pai:PAE1252 hypothetical protein.
       0.745
Pcal_1373
PFAM: PaREP1 domain containing protein; KEGG: pai:PAE0002 paREP1.
       0.539
Pcal_1369
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: formate dehydrogenase.
       0.534
Pcal_1370
PFAM: Rieske [2Fe-2S] domain protein; KEGG: hypothetical protein.
       0.528
Pcal_1367
PFAM: periplasmic solute binding protein; KEGG: pai:PAE0564 putative zinc / manganese transport system substrate-binding protein.
       0.516
Pcal_1368
Protein of unknown function DUF650, N-terminal domain protein; Involved in DNA damage repair.
       0.472
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
       0.449
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.