STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1497Hypothetical protein; KEGG: son:SO1427 decaheme cytochrome c. (225 aa)    
Predicted Functional Partners:
Pcal_1496
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pai:PAE2661 formate dehydrogenase beta subunit.
       0.580
Pcal_1499
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pai:PAE2860 molybdopterin oxidoreductase, iron-sulfur binding subunit.
       0.579
Pcal_1498
PFAM: Polysulphide reductase, NrfD; KEGG: pai:PAE2861 molybdopterin oxidoreductase, membrane subunit.
       0.574
Pcal_1500
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pai:PAE2859 molybdopterin oxidoreductase, molybdopterin binding subunit.
       0.574
Pcal_1501
PFAM: HEPN domain protein; KEGG: pai:PAE1894 hypothetical protein.
       0.428
Pcal_1502
PFAM: DNA polymerase, beta domain protein region; KEGG: pai:PAE1893 hypothetical protein.
       0.428
Pcal_1495
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pai:PAE2860 molybdopterin oxidoreductase, iron-sulfur binding subunit.
       0.419
Pcal_1494
Respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex subunit NrfD; PFAM: Polysulphide reductase, NrfD; KEGG: pai:PAE2861 molybdopterin oxidoreductase, membrane subunit.
       0.411
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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