STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1569KEGG: sto:ST1046 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Pcal_1578
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: sus:Acid_6556 hydrogen:quinone oxidoreductase; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.955
Pcal_1570
KEGG: sto:ST1045 hypothetical protein.
   
   0.949
Pcal_1566
PFAM: hydrogenase formation HypD protein; KEGG: pho:PH0879 hydrogenase expression/formation protein hypD.
  
  
 0.868
Pcal_1575
PFAM: Nickel-iron dehydrogenase small subunit, N-terminal domain protein; KEGG: fal:FRAAL2392 uptake hydrogenase small subunit precursor (hydrogenlyase) (membrane-bound hydrogenase small subunit).
  
  
 0.798
Pcal_1568
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: mth:MTH205 hydrogenase expression/formation protein HypE.
  
  
 0.793
Pcal_1565
Hypothetical protein; KEGG: tte:TTE0132 Hydrogenase maturation factor.
  
  
 0.790
Pcal_1572
Hypothetical protein.
     
 0.783
Pcal_1571
Hypothetical protein.
       0.773
Pcal_1573
Hypothetical protein.
       0.773
Pcal_2138
Conserved hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
   
   0.768
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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