STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1700PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: pai:PAE2371 NADH oxidase (nox). (448 aa)    
Predicted Functional Partners:
Pcal_1701
PFAM: FAD dependent oxidoreductase; KEGG: pai:PAE2703 hypothetical protein.
  
 
 0.875
Pcal_1456
KEGG: pai:PAE2597 sulfite reductase beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
      0.790
Pcal_1702
PFAM: Thioredoxin domain; KEGG: thioredoxin.
   
 
 0.702
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily.
  
 
 0.683
Pcal_0182
D-proline dehydrogenase; PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pai:PAE2095 conserved within P.aerophilum.
  
 
 0.589
Pcal_0537
PFAM: FAD dependent oxidoreductase; KEGG: pai:PAE1543 hypothetical protein.
  
 
 0.589
Pcal_1655
PFAM: FAD dependent oxidoreductase; KEGG: pai:PAE2310 proline dehydrogenase.
  
 
 0.589
Pcal_1697
TIGRFAM: Glutaredoxin-like domain protein; PFAM: Thioredoxin domain; KEGG: pai:PAE2366 glutaredoxin-like protein.
   
 
 0.538
Pcal_1349
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pai:PAE0272 Rieske iron sulfur protein, putative.
  
 
 0.524
Pcal_1468
PFAM: Rieske [2Fe-2S] domain protein; KEGG: fal:FRAAL4561 putative dioxygenase ferredoxin subunit.
  
 
 0.524
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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