Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pcal_1908KEGG: pai:PAE3603 nitric oxide reductase, cytochrome b subunit. (720 aa)    
Predicted Functional Partners:
Pcal_1928
Nitrous oxide reductase apoprotein; PFAM: cytochrome c oxidase, subunit II; KEGG: mag:amb3086 nitrous oxide reductase.
 
 
 0.993
Pcal_1907
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pai:PAE3611 nitrate reductase alpha subunit.
 
  
 0.777
Pcal_1906
TIGRFAM: nitrate reductase, beta subunit; KEGG: pai:PAE3612 nitrate reductase beta subunit.
 
  
 0.675
Pcal_1909
TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: pai:PAE3610 nitrate reductase delta subunit.
  
  
 0.663
Pcal_1931
Nitrous oxidase accessory protein-like protein; KEGG: hma:rrnAC0392 copper binding protein.
 
  
 0.661
Pcal_1938
SMART: Parallel beta-helix repeat; KEGG: pai:PAE1362 NosD homolog.
 
  
 0.609
Pcal_1933
Hypothetical protein.
 
  
 0.588
Pcal_1929
KEGG: dsy:DSY0264 hypothetical protein.
 
  
 0.544
Pcal_1706
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pai:PAE0579 metallo cofactor biosynthesis protein.
 
  
 0.534
Pcal_1716
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pai:PAE0596 metallo cofactor biosynthesis protein.
 
  
 0.503
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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