STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1927PFAM: Bacterio-opsin activator, HTH domain protein. (143 aa)    
Predicted Functional Partners:
Pcal_1925
KEGG: pai:PAE3625 hypothetical protein.
       0.539
Pcal_1926
KEGG: pai:PAE3602 putative uncharacterized protein involved in response to NO.
       0.539
Pcal_1928
Nitrous oxide reductase apoprotein; PFAM: cytochrome c oxidase, subunit II; KEGG: mag:amb3086 nitrous oxide reductase.
       0.450
Pcal_1929
KEGG: dsy:DSY0264 hypothetical protein.
       0.450
Pcal_1930
KEGG: ade:Adeh_2401 hypothetical protein.
       0.450
Pcal_1931
Nitrous oxidase accessory protein-like protein; KEGG: hma:rrnAC0392 copper binding protein.
       0.450
Pcal_1932
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01965 putative spermidine/putrescine transport ATP-binding ABC transporter protein.
       0.450
Pcal_1933
Hypothetical protein.
       0.450
Pcal_1934
PFAM: major facilitator superfamily MFS_1; KEGG: pai:PAE2559 tetracycline resistance protein.
       0.403
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.