STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_1943PFAM: cytochrome c oxidase, subunit III; cytochrome c oxidase, subunit I; KEGG: pai:PAE1337 cytochrome C oxidase subunit I /III; Belongs to the heme-copper respiratory oxidase family. (798 aa)    
Predicted Functional Partners:
Pcal_1944
PFAM: cytochrome c oxidase, subunit II; KEGG: pai:PAE1338 cytochrome C oxidase subunit II.
 
 0.999
Pcal_1950
PFAM: cytochrome c oxidase, subunit II; KEGG: pai:PAE1355 cytochrome C oxidase subunit II.
 
 0.999
ctaB2
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 0.996
ctaB1
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 0.994
Pcal_1912
PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pai:PAE1350 cytochrome b/b6.
 
 
 0.992
Pcal_1949
PFAM: cytochrome c oxidase, subunit I; KEGG: pai:PAE1357 cytochrome C oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
0.953
Pcal_2048
PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: afu:AF1831 F420H2:quinone oxidoreductase, 41.2 kDa subunit, putative.
  
 
 0.951
Pcal_0515
PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pai:PAE1581 NADH-ubiquinone oxidoreductase subunit.
  
 
 0.949
Pcal_2053
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: afu:AF1827 F420H2:quinone oxidoreductase, 43.2 kDa subunit, putative.
  
 
 0.936
Pcal_0521
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pai:PAE1567 NADH-ubiquinone oxidoreductase subunit.
  
 
 0.929
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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