STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_2087KEGG: pai:PAE0661 H+-transporting ATP synthase subunit F (atpF). (100 aa)    
Predicted Functional Partners:
Pcal_0549
PFAM: V-type ATPase, 116 kDa subunit; KEGG: pai:PAE1773 H+-transporting ATP synthase subunit I (atpI), conjectural; Belongs to the V-ATPase 116 kDa subunit family.
  
 0.999
atpB
Sodium-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.
  
 0.999
atpE
H+-transporting two-sector ATPase, E subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.999
atpA
Sodium-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
  
 0.999
Pcal_2162
TIGRFAM: V-type ATPase, D subunit; PFAM: H+-transporting two-sector ATPase, D subunit; KEGG: pai:PAE0758 H+-transporting ATP synthase subunit D.
  
 0.999
Pcal_2164
KEGG: pai:PAE0753 H+-transporting ATP synthase subunit C.
  
 0.999
carS
Protein of unknown function DUF46; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
    0.758
Pcal_2085
PFAM: zinc finger, C2H2-type domain protein; KEGG: pai:PAE0659 hypothetical protein containing 3 C2H2 zinc finger motifs.
       0.739
Pcal_0516
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pai:PAE1580 NADH-ubiquinone oxidoreductase subunit.
  
  
 0.711
Pcal_2049
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pai:PAE1580 NADH-ubiquinone oxidoreductase subunit.
  
  
 0.711
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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