STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_2167Nodulation efficiency protein NfeD; PFAM: protein of unknown function DUF107; KEGG: pai:PAE0749 conserved protein (NfeD homolog). (428 aa)    
Predicted Functional Partners:
Pcal_2166
PFAM: band 7 protein; KEGG: pai:PAE0750 conserved protein (band 7 homolog).
 
  
 0.943
Pcal_0046
PFAM: protein of unknown function DUF107; KEGG: pai:PAE0840 hypothetical protein.
  
  
 0.611
Pcal_0688
KEGG: pai:PAE1105 hypothetical protein.
  
  
 0.611
Pcal_2164
KEGG: pai:PAE0753 H+-transporting ATP synthase subunit C.
       0.513
Pcal_2165
KEGG: pai:PAE0752 hypothetical protein.
       0.513
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.