STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCD1Cell differentiation protein rcd1. (399 aa)    
Predicted Functional Partners:
CDV56_101528
Uncharacterized protein.
    
 0.998
CDV56_108766
Uncharacterized protein.
    
 0.998
CDV56_104566
RING-type domain-containing protein.
    
 0.997
CDV56_102972
Uncharacterized protein.
   
 0.997
CCR4
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 0.993
CDV56_103325
NOT2_3_5 domain-containing protein.
    
 0.981
CDV56_104233
CUE domain-containing protein.
    
 0.972
CDV56_105696
Uncharacterized protein.
    
   0.877
CDV56_101231
PAP-associated domain-containing protein.
    
   0.786
POB3
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
   
 0.762
Your Current Organism:
Aspergillus thermomutatus
NCBI taxonomy Id: 41047
Other names: A. thermomutatus, Aspergillus fischeri var. thermomutatus, CBS 208.92, NRRL 20748, Neosartorya pseudofischeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.