Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCB14908.1 | SCB20826.1 | GA0061103_2212 | GA0061103_2920 | Bifunctional non-homologous end joining protein LigD. | DNA ligase-1. | 0.538 |
SCB14908.1 | SCB41089.1 | GA0061103_2212 | GA0061103_5753 | Bifunctional non-homologous end joining protein LigD. | Uncharacterized conserved protein YecE, DUF72 family. | 0.730 |
SCB14908.1 | SCB46834.1 | GA0061103_2212 | GA0061103_0017 | Bifunctional non-homologous end joining protein LigD. | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | 0.791 |
SCB14908.1 | SCB46853.1 | GA0061103_2212 | GA0061103_0022 | Bifunctional non-homologous end joining protein LigD. | Bifunctional non-homologous end joining protein LigD. | 0.994 |
SCB14908.1 | SCB46868.1 | GA0061103_2212 | GA0061103_0026 | Bifunctional non-homologous end joining protein LigD. | Exodeoxyribonuclease-3. | 0.799 |
SCB14908.1 | ku | GA0061103_2212 | GA0061103_0023 | Bifunctional non-homologous end joining protein LigD. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.937 |
SCB14908.1 | ku-2 | GA0061103_2212 | GA0061103_0024 | Bifunctional non-homologous end joining protein LigD. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.937 |
SCB20826.1 | SCB14908.1 | GA0061103_2920 | GA0061103_2212 | DNA ligase-1. | Bifunctional non-homologous end joining protein LigD. | 0.538 |
SCB20826.1 | SCB46834.1 | GA0061103_2920 | GA0061103_0017 | DNA ligase-1. | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | 0.454 |
SCB20826.1 | SCB46853.1 | GA0061103_2920 | GA0061103_0022 | DNA ligase-1. | Bifunctional non-homologous end joining protein LigD. | 0.499 |
SCB20826.1 | SCB46868.1 | GA0061103_2920 | GA0061103_0026 | DNA ligase-1. | Exodeoxyribonuclease-3. | 0.774 |
SCB20826.1 | ku | GA0061103_2920 | GA0061103_0023 | DNA ligase-1. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.450 |
SCB20826.1 | ku-2 | GA0061103_2920 | GA0061103_0024 | DNA ligase-1. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.440 |
SCB41089.1 | SCB14908.1 | GA0061103_5753 | GA0061103_2212 | Uncharacterized conserved protein YecE, DUF72 family. | Bifunctional non-homologous end joining protein LigD. | 0.730 |
SCB41089.1 | SCB46834.1 | GA0061103_5753 | GA0061103_0017 | Uncharacterized conserved protein YecE, DUF72 family. | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | 0.761 |
SCB41089.1 | SCB46853.1 | GA0061103_5753 | GA0061103_0022 | Uncharacterized conserved protein YecE, DUF72 family. | Bifunctional non-homologous end joining protein LigD. | 0.695 |
SCB41089.1 | ku | GA0061103_5753 | GA0061103_0023 | Uncharacterized conserved protein YecE, DUF72 family. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.615 |
SCB41089.1 | ku-2 | GA0061103_5753 | GA0061103_0024 | Uncharacterized conserved protein YecE, DUF72 family. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.580 |
SCB46834.1 | SCB14908.1 | GA0061103_0017 | GA0061103_2212 | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | Bifunctional non-homologous end joining protein LigD. | 0.791 |
SCB46834.1 | SCB20826.1 | GA0061103_0017 | GA0061103_2920 | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | DNA ligase-1. | 0.454 |
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