STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB39711.1P-type conjugative transfer protein TrbJ. (256 aa)    
Predicted Functional Partners:
SCB39723.1
Type IV secretion system protein VirB3.
 
  
 0.977
SCB39693.1
Type IV secretion system protein VirB5.
 
  
 0.973
SCB39699.1
Type IV secretion system protein TrbL.
 
  
 0.973
SCB39738.1
Type IV secretion system protein VirB2.
 
  
 0.971
SCB39717.1
Type IV secretion system protein VirB4.
 
  
 0.964
SCB39680.1
Type IV secretion system protein VirB10.
 
  
 0.963
SCB39686.1
Type IV secretion system protein VirB9.
 
  
 0.963
SCB39744.1
Type IV secretion system protein VirB11.
 
  
 0.962
SCB39674.1
Hypothetical protein.
 
     0.950
SCB39705.1
Conjugative transfer region protein TrbK.
 
     0.949
Your Current Organism:
Rhizobium multihospitium
NCBI taxonomy Id: 410764
Other names: CCBAU 83401, HAMBI 2975, LMG 23946, LMG:23946, R. multihospitium, Rhizobium multihospitium Han et al. 2008, Rhizobium sp. CCBAU 83277, Rhizobium sp. CCBAU 83319, Rhizobium sp. CCBAU 83325, Rhizobium sp. CCBAU 83333, Rhizobium sp. CCBAU 83345, Rhizobium sp. CCBAU 83364, Rhizobium sp. CCBAU 83375, Rhizobium sp. CCBAU 83401, Rhizobium sp. CCBAU 83435, Rhizobium sp. CCBAU 83503, Rhizobium sp. CCBAU 83523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.