STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0009Glycosyl hydrolase, family 32; Belongs to the glycosyl hydrolase 32 family. (534 aa)    
Predicted Functional Partners:
GFO_0012
PfkB family carbohydrate kinase.
 
 
 0.975
GFO_0011
SusD/RagB family protein containing tetratricopeptide repeats.
 
     0.932
GFO_0010
TonB-dependent outer membrane receptor.
 
     0.918
GFO_0008
Major facilitator superfamily permease-possibly sugar transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
 0.893
GFO_0006
Sugar-binding sensor histidine kinase/response regulator hybrid.
 
  
 0.802
GFO_0007
Hypothetical protein.
       0.565
GFO_1033
Vanadium-dependent haloperoxidase family protein.
  
     0.563
pgmB
Beta-phosphoglucomutase.
    
 0.516
GFO_1031
Secreted protein containing FG-GAP repeats.
  
     0.475
GFO_1032
Protein containing FG-GAP repeats.
  
     0.429
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.