STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0010TonB-dependent outer membrane receptor. (1050 aa)    
Predicted Functional Partners:
GFO_0011
SusD/RagB family protein containing tetratricopeptide repeats.
 
 
 
 0.971
GFO_0009
Glycosyl hydrolase, family 32; Belongs to the glycosyl hydrolase 32 family.
 
     0.918
GFO_0008
Major facilitator superfamily permease-possibly sugar transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
   
 0.886
GFO_0006
Sugar-binding sensor histidine kinase/response regulator hybrid.
  
  
 0.765
GFO_0012
PfkB family carbohydrate kinase.
 
     0.665
GFO_1712
SusD/RagB family protein.
 
 
   0.649
GFO_2755
Conserved hypothetical protein.
  
 
   0.644
GFO_0689
SusD/RagB family protein.
 
 
   0.581
GFO_0007
Hypothetical protein.
       0.554
GFO_2139
SusD/RagB family protein.
 
   
 0.518
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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