STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0052Transcriptional regulator. (154 aa)    
Predicted Functional Partners:
GFO_0050
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.755
GFO_0051
Outer membrane efflux protein.
 
     0.717
GFO_0049
AcrB/AcrD/AcrF family membrane transport protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.675
GFO_0053
Conserved hypothetical protein, secreted.
       0.558
GFO_0054
Secreted protein containing cadherin domains.
       0.558
GFO_0827
Conserved hypothetical protein, secreted.
  
     0.484
mscS
Small-conductance mechanosensitive ion channel protein.
 
     0.435
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.