STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0069Conserved hypothetical protein. (99 aa)    
Predicted Functional Partners:
GFO_0070
Hypothetical protein.
       0.773
GFO_2357
Conserved hypothetical protein, UPF0156.
  
 
 0.644
GFO_0860
Conserved hypothetical protein.
  
     0.499
GFO_3474
Conserved hypothetical protein.
  
     0.492
GFO_0066
Conserved hypothetical protein.
       0.486
GFO_0067
Conserved hypothetical protein, membrane.
       0.486
GFO_0068
N-formylkynurenine (aryl-) formamidase.
       0.486
hemN
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.473
GFO_1217
ArnT-like undecaprenyl-phosphate alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
     0.437
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.