STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0194Membrane protein containing DUF420. (179 aa)    
Predicted Functional Partners:
GFO_0193
SCO1/SenC family electron transport protein.
 
  
 0.892
GFO_0192
Membrane or secreted protein.
       0.822
GFO_3200
SCO1/SenC family electron transport protein.
  
 0.820
GFO_0195
Conserved hypothetical protein, membrane or secreted.
 
     0.767
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
    0.716
cyoC
Cytochrome o ubiquinol oxidase subunit III.
 
     0.705
GFO_0191
Conserved hypothetical protein, membrane.
 
     0.631
ctaE
Cytochrome c oxidase subunit III.
 
     0.629
GFO_1341
SCO1/SenC family electron transport protein.
 
  
 0.603
ctaC
Cytochrome c oxidase subunit II.
 
    0.575
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.