STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0210OmpH family outer membrane protein. (169 aa)    
Predicted Functional Partners:
GFO_0212
Surface antigen D15 family outer membrane protein.
 
  
 0.929
GFO_0211
OmpH family outer membrane protein.
 
     0.884
GFO_0794
Protein containing tetratricopeptide repeats.
  
  
 0.764
GFO_0385
Conserved hypothetical protein, secreted.
 
  
 0.754
GFO_2975
PpiC-type secreted peptidyl-prolyl cis-trans isomerase.
  
  
 0.741
GFO_0214
Conserved hypothetical protein, secreted.
   
   0.728
GFO_3531
Conserved hypothetical protein, secreted.
  
     0.724
GFO_0145
Conserved hypothetical protein, membrane.
  
     0.717
uppS
Undecaprenyl-pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.667
surA
PpiC-type peptidyl-prolyl cis-trans isomerase.
 
  
 0.666
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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