STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0211OmpH family outer membrane protein. (269 aa)    
Predicted Functional Partners:
GFO_0212
Surface antigen D15 family outer membrane protein.
 
  
 0.914
GFO_0210
OmpH family outer membrane protein.
 
     0.884
GFO_0214
Conserved hypothetical protein, secreted.
 
 
   0.882
GFO_2891
Conserved hypothetical protein, secreted.
  
    0.770
GFO_0387
Conserved hypothetical protein, secreted.
 
     0.756
GFO_0182
Conserved hypothetical protein, secreted.
  
     0.752
GFO_0145
Conserved hypothetical protein, membrane.
  
     0.749
uppS
Undecaprenyl-pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.748
GFO_0651
Conserved hypothetical protein, secreted.
  
     0.745
GFO_0399
Conserved hypothetical protein.
  
     0.682
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.